CBMA
Centro de Biologia Molecular e Ambiental
Centre of Molecular and Environmental Biology
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Jorge M. Pacheco | |
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253604364 | |
Full Professor | |
Sustaining Life - Biodiversity and Functional Ecology | |
Universidade do Minho - Campus de Gualtar, Departamento de Matemática e Aplicações - 4710-057, Braga - Portugal |
A. Cooperation between individuals in the framework of Evolutionary Game Theory. |
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Climate Policies under Wealth Inequality A bottom-up institutional approach to cooperative governance of risky commons Fractal cartography of urban areas The emergence of fairness in repeated group interactions Risk of collective failure provides an escape from the tragedy of the commons Adaptive contact networks change disease infectiousness and dynamics Neutral evolution in paroxysmal nocturnal hemoglobinuria Social diversity promotes the emergence of cooperation in public goods games Chronic Myeloid Leukemia: Origin, Development, Response To Therapy, And Relapse Acquired hematopoietic stem cell disorders and mammalian size Depth of response and outcome in multiple myeloma Stern-judging : A simple, successful norm which promotes cooperation under indirect reciprocity Cooperation Prevails when individuals adjust their social ties (open access) Evolutionary Dynamics of Social Dilemmas in Structured Heterogeneous Populations (open access) Scale-Free networks provide a unifying framework for the Emergence of Cooperation |
Multi-Agent Simulations of Global Governance |
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Co-evolution and self-organization of cooperation |
Damping of nuclear excitations at finite temperature An algebraic program for the states associated with the U(5) x O(5) x O(3) chain of groups Fluctuations in the Shape Transitions of Hot Nuclei Time dependent Hartree-Fock calculation of the escaping width of the giant monopole resonance in Oxygen 16 Algebraic manipulation of the states associated with the U(5) x O(5) x O(3) chain of groups: Effect of surface fluctuations in the line shape of plasma resonances in small metal clusters Microscopic structure of the plasma resonance in charged potassium microclusters The intrinsic line width of the plasmon resonances in metal microclusters at very low temperatures: Quantal surface fluctuations Optical response of metal microclusters: Atomic analog of the giant dipole resonance in nuclei A new formulation of the dynamical response of many-electron systems and the photoabsorption Effects of motional narrowing on the plasmon resonance in small metal clusters Microscopic calculation of the van der Waals interaction between small metal clusters Response of finite many-electron systems beyond the time dependent Photoabsorption cross section of negatively charged alkali metal clusters The van de Waals Interaction between alkali microclusters Microscopic description of the plasmon resonance in small deformed metal clusters Single-particle and collective degrees of freedom in C60 The reintroduction of the ionic skeleton in the jellium model for metal clusters: Microscopic structure of collective charge density oscillations in C60 and C70 Response of metal clusters to elastic electron impact Effective particle-hole interaction and the optical response of simple metal clusters Anisotropic effects in the optical spectra of magic metal clusters: the role of ionic structure Monolayer metal coverage of fullerenes: The optical response Reintroducing the ionic structure in the jellium model for metal clusters: Surf. Rev. and Lett. 3 (1996) 313 Surf. Rev. and Lett. 3 (1996) 753 Ab-Initio Pseudopotential Calculation of the Photo-Response of Metal Clusters Plasmons and Excitons in Many-electron systems and the Optical response of Atomic Clusters First-Principles Determination of the Dispersion Interaction between Shape Phase-Transitions in the Absorption Spectra ofAtomic Clusters Effects of geometry in elastic scattering and capture of free electrons by C60 molecules Ionic and Temperature Aspects of the Photoresponse of Metallic Clusters Reply... "Shape Phase-Transitions in the Absorption Spectra ofAtomic Clusters" Phase diagram of C60 from ab-initio intermolecular potential Highly efficient implementation of a Gaussian program to computing total energy of giant molecules Monte Carlo simulations with first-principles energies Prediction of Liquid C60 from ab-initio intermolecular potential, in Modelling Complex Systems Influence of Exchange-Correlation potential in Density Functional calculations on polarizabilities and absorption spectra of alkali-metal clusters Structural and electronic properties of C 36 Structural Identification of MetCars First-principles study of the possibility of condensed phases of endohedral silicon cage clusters Silicon and metal nanotemplates: Size and species dependence of structural and electronic properties First-principles norm-conserving pseudopotential with explicit incorporation of semicore states Shapes of cagelike metal carbide clusters: First-principles calculations Quantum size effects in the polarizability of carbon fullerenes Recurrent epidemics in small world networks Network dependence of the dilemmas of cooperation Scale-Free networks provide a unifying framework for the Emergence of Cooperation Graph topology plays a determinant role in the evolution of cooperation Epidemics spreading and cooperation dynamics on homogeneous small-world networks A new route to the evolution of cooperation The Evolution of Norms Evolutionary Dynamics of Social Dilemmas in Structured Heterogeneous Populations Stochastic dynamics of invasion and fixation Stochasticicy and Evolutionary Stability Active linking in evolutionary games Stochastic payoff evaluation increases the temperature of selection Allometric scaling of the hematopoietic stem cell pool across mammals Cooperation Prevails when individuals adjust their social ties Coevolution of strategy and structure in complex networks with dynamical linking Stern-judging : A simple, successful norm which promotes cooperation under indirect reciprocity The Emergence of Tumor Metastases Pairwise Comparison and selection temperature in evolutionary game dynamics Stochastic dynamics of hematopoietic tumor stem cells In vivo and in silico studies on single versus multiple transplants for multiple myeloma Silicon-metal clusters: Nano-templates for cluster assembled materials Compartmental Architecture and Dynamics of Hematopoiesis Breaking the symmetry between interaction and replacement in evolutionary dynamics on graphs Evolutionary Graph Theory: Breaking the symmetry between interaction and replacement Serum M-spike and transplant outcome in patients with multiple myeloma Evolution of norms in a multi-level selection model of conflict and cooperation Ontogenic growth of the haematopoietic stem cell pool in humans Relationship between depth epth of response and outcome in multiple myeloma On the origin of multiple mutant clones in paroxysmal nocturnal hemoglobinuria Acquired hematopoietic stem cell disorders and mammalian size Repeated games and direct reciprocity under active linking A Multi-Level Selection Model for the Emergence of Social Norms Evolution of cooperation in a population of selfish adaptive agents Stability analysis of a bulk material built from silicon cage clusters: A first-principles approach Some dynamic aspects of hematopoietic stem-cells Multiple mutant clones in blood rarely coexist Chronic Myeloid Leukemia: Origin, Development, Response To Therapy, And Relapse Dynamics of haemopoiesis across mammals Progenitor Cell Self-renewal and Cyclic Neutropenia Social diversity promotes the emergence of cooperation in public goods games Evolutionary dynamics of collective action in N-person stag hunt dilemmas Cyclic neutropenia in mammals The evolution of prompt reaction to adverse ties Neutral evolution in paroxysmal nocturnal hemoglobinuria Reacting differently to adverse ties promotes cooperation in social networks The allometry of chronic myeloid leukemia Evolution of Cooperation under N-person Snowdrift Games Cancer phenotype as the outcome of an evolutionary game between normal and malignant cells In silico evolutionary dynamics of tumor virotherapy Reply. . . Evolutionary game theory: lessons and limitations, a cancer perspective Population structure induces a symmetry breaking favoring the emergence of cooperation Tyrosine kinase inhibitor therapy can cure chronic myeloid leukemia without hitting leukemic stem cells Bulk materials made of silicon cage clusters doped with Ti, Zr, or Hf Hierarchically constrained dynamics and emergence of complex behavior in nano-hybrids Emergence of cooperation in adaptive social networks with behavioral diversity Cyclic neutropenia in animals Reproductive fitness advantage of BCR–ABL expressing leukemia cells Modelling Hematopoiesis in Health and Disease Adaptive contact networks change disease infectiousness and dynamics Somatic mutations and the hierarchy of hematopoiesis Vibrational spectra of silicon cage clusters doped with Ti, Zr, or Hf Modeling the architecture and dynamics of hematopoiesis Evolutionary Dynamics of Chronic Myeloid Leukemia Coevolution of Cooperation, Response to Adverse Social Ties and Network Structure Selection pressure transforms the nature of social dilemmas in adaptive networks Co-evolution of pre-play signaling and cooperation Incipient Cognition Solves the Spatial Reciprocity Conundrum of Cooperation Explaining the in vivo and in vitro differences in leukemia therapy Stochastic dynamics and the evolution of mutations in stem cells Risk of collective failure provides an escape from the tragedy of the commons Escaping the tragedy of the commons via directed investments The role of diversity in the evolution of cooperation Evolutionary Dynamics of Climate Change under Collective-Risk Dilemmas Dynamics of mutant cells in hierarchical organized tissues Evolutionary dynamics of collective action when individual fitness derives from group decisions taken in the past From Local to Global Dilemmas in Social Networks Tracking the Evolution of Cooperation in Complex Networked Populations Evolution of social diversity under the distributed prisoner's dilemma The emergence of fairness in repeated group interactions Cognitive strategies take advantage of the cooperative potential of heterogeneous networks How selection pressure changes the nature of social dilemmas in structured populations Fractal cartography of urban areas Individual memory and the emergence of cooperation Evolution of collective action in adaptive social structures A bottom-up institutional approach to cooperative governance of risky commons Urban Dynamics, Fractals and Generalized Entropy Climate Change Governance, Cooperation and Self-organization Climate Policies under Wealth Inequality Origin of Peer Influence in Social Networks |
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Role of self-interaction corrections in the photoabsorption cross section of small metal cluster (indexed in ISI) The optical response of anionic alkali metal clusters Towards a First-Principles Determination of the Phase Diagram of C60 Emergence of Cooperation in Heterogeneous Structured Populations The coevolution of loyalty and cooperation (publicação indexada no ISI) Behavioral differences and the evolution of cooperation in adaptive social networks Social diversity favors the emergence of cooperative behavior Darwin and the Somatic Evolution of Cancer Minimizing CO2 Emissions in a Computing World Creating metamaterials at the nano-scale Evolutionary dynamics of collective action Co-evolution of cooperation and pre-play signaling Sistemas Territoriais Complexos – da não linearidade das dinâmicas territoriais à emergência de territórios auto-organizados Collective Evolutionary Dynamics and Spatial Reciprocity under the N-Person Snowdrift Game Evolutionary Dynamics of Cooperation Under the Distributed Prisoner's Dilemma Evolving the asymmetry of the Prisoner's dilemma game in adaptive social structures Emergence of collective action under coordination dilemmas Frequency-dependent disease spreading Sistemas Territoriais Complexos – da não linearidade das dinâmicas territoriais à emergência de territórios auto-organizados Creating metamaterials at the nano-scale Evolutionary dynamics of collective action Co-evolution of cooperation and pre-play signaling Collective Evolutionary Dynamics and Spatial Reciprocity under the N-Person Snowdrift Game Evolutionary Dynamics of Cooperation Under the Distributed Prisoner's Dilemma Evolution of social diversity under the distributed prisoners dilemma Evolution of Fairness and Conditional Cooperation in Public Goods Dilemmas |
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Application of the Jellium Model and its Refinements to the Study of the Electronic Properties of Metal Clusters Darwin, Evolution and Cooperation Successful Cancer Treatment: Eradication of Cancer Stem Cells Some dynamic aspects of hematopoietic stem-cells Evolutionary games in self-organizing populations Evolution of Cooperation in Adaptive Social Networks Hematopoietic stem cells and their dynamics Evolutionary dynamics of collective action (publicação indexada no ISI) The messianic effect of pathological altruism Coordinating towards a common good Evolutionary Dynamics of Mutations in Hematopoietic Stem Cells and Beyond Playing with risk to save the planet |
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2014 - Climate Change Governance, Cooperation and Self-organization (Plenary Talk) 2014 - The Evolution of Quorum Signaling (Department Coloquium, Invited Talk) 2014 - The Ecology of Cancer (Department Coloquium, Invited Talk) 2013 - Cancer Ecology (Invited Talk) 2013 – Avoiding Catastrophic Climate Change: The Public Goods Game we cannot afford to lose (Invited Talk) 2013 – Avoiding Catastrophic Climate Change: The Public Goods Game we cannot afford to lose (Plenary Talk) 2013 – Evolutionary Game Theory & Cancer (Invited Talk) 2013 – Active stem cells in mammalian hematopoiesis (Plenary Talk) 2013 – Diversity, Adaptation and the Evolution of Cooperation (Invited Talk) 2013 – Stochastic Effects in Hematopoiesis (Invited Talk) 2012 – Climate Change : A Collective Risk Dilemma (Plenary Talk) 2012 – If cells play dice, can we gamble our way of out of cancer ? (Plenary Talk) 2012 – Role of information transfer in multi-partner choice models of cooperation 2011 – Evolutionary dynamics of Climate Change under the Collective Risk Dilemma 2011 – Climate change: a risky public goods game (Invited Talk) 2011 – Epidemiologia em redes complexas (Advanced Lectures Course) 2011 – Models of hematopoiesis (PhD Advanced Course) 2010 – Cooperation & trade on Networks of the First Global Age (Invited Talk) 2010 – The math of hematopoiesis (Advanced Course ) 2010 – Evolutionary dynamics of climate change under the collective risk dilemma (Invited Talk) 2010 – Adaptive contact networks change disease infectiousness and dynamics (Invited Talk) 2010 – Creating meta-materials at the nano-scale (MSc Advanced Course ) 2010 – Apostar no risco para controlar o aquecimento global do planeta (Invited Talk) 2010 – Evolutionary Game Theory of Cooperation (PhD Advanced Course) 2010 – Modeling (normal and abnormal) hematopoiesis (PhD Advanced Course) 2010 – Evolutionary dynamics of cooperation on adaptive networks (Invited Talk) 2009 – Modeling the architecture and dynamics of hematopoiesis (Invited Talk) 2009 – The evolution of group cooperation (Invited Talk) 2009 – Coordinating towards a common good (Invited Talk) 2009 – Evolutionary dynamics of collective action (Invited Talk) 2009 – The complexity of collective action (invited talk) 2009 – Evolutionary Dynamics of Collective Action (invited talk) 2009 – Evolutionary Dynamics of Public Goods Games (invited talk) 2009 – Evolutionary Dynamics of Collective Action (invited talk) 2008 – “physics of Biologial systems: From genes to societies”, Lisboa, Portugal (invited talk) 2008 – “Evolution in Health and disease”, IGC-Oeiras, Portugal (invited talk) 2008 – “NET-ACE Conference”, London, England (invited talk) 2008 – “13th International Symposium on dynamic games and applications”, Wroclaw, Poland, (invited talk) 2008 – “First Portuguese Forum of Computational Biology”, Oeiras, Portugal (invited talk) 2008 – “Joint International meeting of the American and Brazillian mathematical Societies”, Rio de Janeiro, Brazil (invited talk) 2008 – “workshop on networks, complexity and competition”, Bled, Slovenia (invited talk) 2008 – “Congresso Nacional de Física Estadística”, Salamanca, Spain, (invited talk) 2008 – “Congrès Annuel de la Société Franceise d'Hématologie”, Paris, France (invited talk) 2008 – “Haematopoiesis and its Disorders. Modelling, Experimental and Clinical Approaches”, Paris, France (invited talk) 2007 – Workshop on complex networks, Amares, Portugal (invited talk) 2007 - ECCS 2007, Dresden, Germany (invited talk) 2007 – Workshop on Complexity, University Carlos III, Madrid, Spain (invited talk) 2007 – Network Science-2007, New York, U.S.A. (invited talk) 2007 - Mathematical Methods and Modeling of Biophysical Phenomena, Búzios, Brazil (invited talk) 2006 - Evolutionary Game Dynamics, Banff, Canada (invited talk) 2006 - Mathematics in Biology and Medicine, IGC-Lisbon, Portugal (invited talk) 2005 - Co-Evolution and Self-Organization in Dynamical Networks,Salou, Spain (invited talk) 2005 - Mathematical Methods and Modeling of Biophysical Phenomena, Angra dos Reis, Brazil (invited talk) 2005 - Advances in Physical Sciences, Aveiro, Portugal (chairman, invited talk) 2004 - Science of Complex Networks: from Biology to the Internet and WWW, Aveiro, Portugal (invited talk) 2005 - Materiais 2005 , Universidade de Aveiro, Portugal (invited talk) 2000 - VECPAR-2000 - Vector and Parallel Computing, Porto, Portugal (invited talk) 2000 - Excitations in Finite and Infinite Systems, CECAM-Lyon, France (invited talk) 2000 - EUCO-CC3 - Third European Conference on Computational Chemistry, Budapeste, Hungary 1999 - Contemporary Aspects of Cluster Physics, Coimbra, Portugal (invited talk) 1999 - Excitations in Finite and Infinite Systems, CECAM-Lyon, France (invited talk) 1999 - Monte Carlo Methods, Coimbra, Portugal (invited talk) 1998 - Theory and Computer Simulation of Materials - Electronic Structure and Optical Properties, Cancún, Mexico (invited talk) 1998 - Physics and Chemistry of Small Clusters, CECAM-Lyon, France (invited talk) 1998 - Parallelization in Computational Physics, Coimbra, Portugal (invited talk) 1998 - IBER98 "III Iberian Joint Meeting on Atomic and Molecular Physics ", Mira, Portugal (chairman) 1997 - NAMITECH Workshop - "The Physics of Nanotubes", Valladolid, Spain (invited talk) 1997 - "EUCO-CC2 - Second European Conference on Computational Chemistry", Lisboa, Portugal (poster) 1997 - Nuclei and Metal Clusters, Praha, Czeck Republic (invited talk) 1996 - Psi K Network Conference on ab-initio calculation of complex processes in materials, 1996 - "Correlations in Unconventional Quantum Liquids", Évora, Portugal (organizer and chairman) 1995 - International workshop on metallic clusters, ECT *, Trento, Italy (invited talk) 1994 - ISSPIC 7 - 7th International Symposium on small particles and inorganic clusters, Kobe, Japan (invited talk) 1993 - Second International conference on atomic and nuclear clusters, Santorini, Grécia (invited talk) 1993 - Conference on Many-Body Physics, Coimbra, Portugal (invited talk) 1992 - Dynamical response of the valence gas in simple metal clusters, Varenna, Italy (invited talk) 1991 - 88.Heraeus-Seminar "Nuclear physics concepts in atomic cluster physics, Bad Honeff, Germany (invited talk) 1991 - Physics and Chemistry of finite systems: From clusters to crystals, Richmond, Virginia Commonwealth University, U.S.A. (invited talk) 1988 - Nuclear Structure Workshop, København, Denmark (invited talk) 1988 - I Workshop on Metal Clusters, København, Denmark (invited talk) OTHER COMMUNICATIONS 2013 – Evolution of Diversity and Cooperation (Advanced Course) 2013 – Evolutionary Dynamics of Collective Action (Lecture) 2013 – Princeton University, U.S.A.(Seminar) 2012 – Evolutionary Games on Adaptive Networks (Advanced Lectures) 2012 – Instituto Gulbenkian de Ciência, Oeiras, Portugal (Seminar) 2012 – Fundação Champalimaud, Lisboa, Portugal Portugal (Seminar) 2012 – Instituto de Medicina Molecular, Lisboa, Portugal (Seminar) 2011 – Instituto Ricardo Jorge, Lisboa, Portugal (Seminar) 2011 –Instituto de Medicina Molecular, Lisboa, Portugal (Seminar) 2011 – Fundação Champalimaud, Lisboa, Portugal (Talk) 2011 – Instituto de Medicina Molecular, Lisboa, Portugal (Talk) 2011 – Universidade do Minho, Braga, Portugal (Seminar) 2011 – Universidade Federal do Rio de Janeiro, Brazil (Seminar) 2010 – ISCVS, Braga Portugal (Seminar) 2010 – Max-Planck-Institute for Complex Systems, Dresden, Germany (Seminar) 2010 – Academia das Ciências de Lisboa, Portugal (Talk) 2010 – Universidade Federal do Rio de Janeiro, Brazil (Seminar) 2009 – Department of Mathematics and Applications, University of Minho, Braga, Portugal (Seminar) 2009 –Complexo Interdisciplinar, University of Lisbon, Portugal (Seminar) 2009 – University of Manchester, Manchester, England (Talk) 2009 – University of Warwick, Warwick, England (Talk) 2009 – Academia das Ciências de Lisboa, Portugal (Talk) 2009 – Universidade Federal do Rio de Janeiro, Brazil (Seminar) 2009 – Universidade Federal Fluminense, Niteroi, Brazil (Seminar) 2009 – Instituto Gulbenkian de Ciência, Oeiras, Portugal (Talk) 2009 – Universidade do Porto, Portugal (Seminar) 2008 – Complexo Interdisciplinar da Universidade de Lisboa, Portugal (Seminar) 2008 – Instituto Gulbenkian de Ciência, Oeiras, Portugal (Talk) 2008 – Program for Evolutionary Dynamics, Harvard, E.U.A. (Talk) 2008 – Mayo Clinic Institute of Molecular Medicine, Rochester, E.U.A. (Talk) 2008 – Instituto de Medicina Molecular, Lisboa, Portugal (Seminar) 2007 – Universidade do Minho, Portugal (Seminar) 2007 – Universidade do Porto, Portugal (Seminar) 2007 – Universidade livre de Bruxelas, Bélgica (Seminar) 2007 – IMPA, Rio de Janeiro, Brazil (Seminar) 2007 – Universidade do Porto, Portugal (Seminar) 2006 – Universidade de Aveiro, Portugal (Seminar) 2005 – Program for Evolutionary Dynamics, Harvard University, U.S.A (Talk) 1998 – Instituto Politécnico de Tomar, Tomar, Portugal (Seminar) 1992 – University of Milão, Italy (Seminar) 1991 – University of Munique, Germany (Seminar) 1991 – University of Milão, Italy (Seminar) 1990 – Intituto Fritz-Haber, Max-Planck Society, Berlim, Germany (Seminar) 1988 – Instituto Niels Bohr, København, Denmark (Seminar) 1982 –Third Meeting of the Portuguese Physical Society, Coimbra, Portugal (Talk) POSTERS 2011 – Predicting long-term response to Imatinib treatment from initial patient response data 2010 – The impact of stochastic dynamics on chronic myeloid leukemia and its therapy (Poster) 2010 – Fitness differences as an explanation for difference between chronic myeloid leukemia therapies (Poster) 2010 – Stochastic extinction of leukemic stem cells provides a road to cure chronic myeloid leukemia (Poster) 2010 – Dynamics of chronic myeloid leukemia under nilotinib therapy (Poster) 2010 – Stochastic elimination of cancer stem cells in patients with chronic myeloid leukemia (Poster) 2010 – Evolutionary dynamics of chronic myeloid leukemia under therapy: a comparison between imatinib and nilotinib treated patients (Poster) 2010 – The impact of stochastic dynamics on chronic myeloid leukemia and its therapymath of hematopoiesis (Poster) 1996 - ISSPIC 8 - 8th International Symposium on small particles and inorganic clusters, København (poster) 1993 - European Research Conference on "Fundamental Aspects of Clusters", Elounda, Grécia (poster) 1992 - Adriatico research conference on clusters and fullerenes, Trieste, Italy (poster) 1990 - ISSPIC 5 - 5th International Symposium on small particles and inorganic clusters, Constanz, Germany (poster) 1990 - Interdisciplinary Workshop on C60, Risø, Denmark (poster) 1987 - 1st Topical Meeting on Giant Resonance Excitation in Heavy-Ion Collisions, Legnaro, Italy (poster) 1987 - International Conference on Nuclear Shapes, Creta, Grécia (poster) 1986 - School E. Majorana, "The response of Nuclei under Extreme conditions, Erice, Italy (poster) 1985 - II La Rabida International Summer School on Theory of Nuclear Structure and Reactions, 1985 - Conference on Semiclassical descriptions of atomic and nuclear collisions, København (poster) |
Mário Rui Bacelar, Portuguese, MSc thesis Carlos Loia Reis, Portuguese, MSc thesis Paulo Alexandre Paiva Andrade, Portuguese, MSc thesis Flávio P. Pinheiro, MSc thesis João A. Moreira, MSc thesis Fernando P. Santos, MSc thesis Gueorgui Kostov Gueorguiev, Bulgarian, PhD thesis Francisco C. Santos, Portuguese, Ph.D. Thesis Sven van Segbroeck, Ph.D. Thesis (VUB, Computer Science, Brussels) Carlos Loia Reis, Ph.D. Thesis (FCUL, Física, U. de Lisboa) Marta Daniela Almeida Santos Ph.D. Thesis (FCUL, Física, U. de Lisboa) Marcos Gaudiano (Argentina), Post Doc Jeromos Vukov (Hungria), Post Doc Pedro Basso Neves (Portugal), Post Doc Flávio P. Pinheiro (Portugal), PhD Vítor V. Vasconcelos (Portugal), PhD Fernando P. Santos (Portugal), PhD |